The method I've used (similar to Haydns) is to attach a sheet of emery paper to a portable surface table and with WD40 or similar, clean the block surface up. Cast iron blocks take a helluva lot of rubbing to remove metal - so it only cleans up the surface. "Trueing" up the surface means machining it IMO.
If the combustion chamber is purely in the piston crown then skimming the head surface won't make a difference to the compression ratio because you're not altering the combustion chamber - unless you machine it so much that the valves are sticking out
I'm pretty sure the Bongo has a flat head as it's indirect injection.
The "deck height" is the measurement the pistons protrude out of the cylinder block - it's imperative this measurement is checked if changing the pistons because a suitable head gasket will need to be fitted to allow the pistons to clear the head/valves. The gasket thicknesss is sometimes identified by notches cut into an outside face of the gasket.
I've known keen amateurs to have the head skimmed and fit a thicker gasket to "compensate" for what they've had removed from the flat surfaced head

all they're doing is reduce the compression ratio and wonder why the newly rebuilt engine is less keen to to start than before

like I say, keen amateurs - and they pay trained mechanics peanuts
