As you said this happened after a motorway drive I would check that the engine is breathing OK you have dealt with the air filter so that would leave the exhaust.
I have known for the matting inside the exhaust to become detached and restrict the outlet of gases.
If you have a vacuum gauge tee that into the inlet manifold some where and make sure your getting around 19 inches of mercury snapping the throttle should pull up around 25 or so. If you dont have one then start the engine and put your hand over the tailpipe blocking the outlet when you release it you should have a healthy PHUT with a good flow when revved!
Alternatively a dirty but foolproof method is to remove it some way down the system preferably as close to the front down pipe as you can thus allowing the gas to bypass the silencers completely.
This could be a mucky job so you may want to do the other checks first.
This is a 2001 and has no EGR I dont know if the later type had EGR fitted or not. If yours has this then treat that as a separate issue for now
Here are some images that may help and the basic checks to carry out.
This is of the butterfly (throttle body) at the rear of the engine. The hole you can see is where you would normally find the base idle screw or air bypass. Its not fitted so the ecu controls it. There may be an adjustment on the air valve. Will come to that later.
https://goo.gl/photos/uK593L63xxRMJwod9
You can see behind it the duct that splits and the fabulous repair made.
You would need to remove that pipe in order to get in to clean the butterfly they become brittle so take care.
Below it is an idle switch with a grey cap, This tells the ECU to switch to the idle circuit. a continuity check here will show if that is working ok its just on/off. Off when open. Adjusting your throttle cable m,ay have pulled this off the rest position you can just ignore that for now.
The large dark grey plug on the right is the throttle pot.
https://goo.gl/photos/qPFRBF6Eju5DXo5d8
To check the throttle pot disconnect the plug and place an ohmmeter across an outer pin and another to the centre pin on the pot. Resistance at rest should be around 1.2k rising to 4.50k on wide open throttle or vice versa depending on what terminal you are on.
What is more important is that the resistance rises and falls steadily with no drop outs or sudden rises in resistance.
The supply voltage to the pot should around 4.5- 5Vs at the plug ignition on.
These are of the air valve its at the front of the engine, as well as having air pipes attached it is also fed with coolant so would also act as cold start valve also.
https://goo.gl/photos/vKvYHhQhTLWoU5t88
If you place your finger on the top and turn on the ignition (not start) you should feel/hear a buzz of about 5 secs as it sets itself up.
If you want to clear this out you will need to remove it from the van to get to it properly. You will need to clamp off the water pipes.
Here are some images of the unit detached.
https://goo.gl/photos/nkZnGv4HEUXMXDrg8
At the end of this device is a cross head screw without taking the unit apart I cannot see for sure its purpose , it may well be the base idle screw as this would be the logical place to put it, anyhow I would leave that alone.
If you dont get the buzz then check the supply voltage should be around 5V igntion on.
This image is of the PCV valve that sits in the rocker box if you trace the tube coming from it it runs to a Y branch under the manifold just check that they are all connected with no splits or kinks. Its a one way valve so check it by sucking and blowing.
https://goo.gl/photos/SYZFdhDdgZivnQMF9
While you are under there check the degassing unit is operating OK by switching on the ignition while holding the valve you should feel it click.
https://goo.gl/photos/vYmhVFjaVhec1mHW6
Next on the list is the AF metering unit, this is in the ducting next to the air filter. Ensure it has a secure connection and look for any air leaks around this after the unit. This unit is a bit trickier to test so may be best to do after the others.
Those are your basic checks relating to this system.
Let us know how you get on.
Has your vehicle a separate ignition coil?